PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400044183
Common NameLOC102589826
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 505aa    MW: 57549.4 Da    PI: 8.7883
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400044183genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.4e-17162211155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  PGSC0003DMP400044183 162 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 211
                           78*******************......55************************997 PP

2AP243.86.2e-14254304155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV+ +k  grW+A+       g    +k+++lg f+t++eAa+a+++a+ + +g
  PGSC0003DMP400044183 254 SKYRGVTLHK-CGRWEAR---M---GqllGKKYVYLGLFDTENEAARAYDKAAINCNG 304
                           89********.7******...5...334336*********************988665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-16162220IPR016177DNA-binding domain
PfamPF008475.9E-9162211IPR001471AP2/ERF domain
CDDcd000185.15E-11163218No hitNo description
Gene3DG3DSA:3.30.730.104.6E-17163219IPR001471AP2/ERF domain
SMARTSM003807.5E-32163225IPR001471AP2/ERF domain
PROSITE profilePS5103217.596163219IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-16254312IPR016177DNA-binding domain
CDDcd000183.04E-24254312No hitNo description
PfamPF008477.7E-10254304IPR001471AP2/ERF domain
PROSITE profilePS5103215.725255312IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-16255312IPR001471AP2/ERF domain
SMARTSM003802.9E-30255318IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MWNLNDSPDH RRDYEGKGVE RSISNSSSSA VEELYGSEEE DEFLEQNGLK GKKKKSIPSK  60
IFGFSMIAPP NNNNDDNLSS ESEPPVTRQF FPVDESEIGS GNFNDRSCRF PRAHWAGVKF  120
YQPEPSTAVL GKGSELSQVQ VQVQVQVQPM KKSRRGPRSR SSQYRGVTFY RRTGRWESHI  180
WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR GVEADINFNL EDYEEDLKQM KNLTKEEFVH  240
VLRRQSTGFP RGSSKYRGVT LHKCGRWEAR MGQLLGKKYV YLGLFDTENE AARAYDKAAI  300
NCNGKDAVTN FDPCIYENEL NSSESSNKAA DHSLDLSLGS STSKQKSREM EDTNKDQNYS  360
SMQFDVDWRH QGSRLKQHSP IDMEYGRRRN VYNETDTLQL LSQTHLHSPG SFKTNSNEMQ  420
RFGQYMRAGD SQMIPPQFTS SNYQVQFPSS NNRRDTQQWQ SNNVAPPHLF ATAAASSGFP  480
QQILRHQNWP HKNGFHYSLT RPSN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5869520.0HQ586952.1 Solanum lycopersicum AP2 transcription factor SlAP2b mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360215.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X2
SwissprotP479271e-119AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLM1CE410.0M1CE41_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000655010.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-111AP2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]